List of projects using BioD or are part of the larger BioD ecosystem.
Sambamba
Sambamba is a fast, robust, high performance and parallelized, toolkit for working with SAM and BAM files. Sambamba is an important work horse for many sequencing centres around the world.
Citation:
Artem Tarasov, Albert J. Vilella, Edwin Cuppen, Isaac J. Nijman, Pjotr Prins; Sambamba: fast processing of NGS alignment formats, Bioinformatics, Volume 31, Issue 12, 15 June 2015, Pages 2032–2034, https://doi.org/10.1093/bioinformatics/btv098-
Faster-LMM-D
Faster_lmm_d is a lightweight linear mixed-model solver for genome-wide association studies (GWAS).
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Multiple QTL Mapping
Multiple QTL Mapping provides a sensitive approach for mapping quantititive trait loci (QTL) in experimental populations.